IMAGE TOOL RESOURCE (ITR)

Image Tool Resource (ITR) is an index of open source bioimage informatics software. With ITR, Euro-BioImaging aims to publish tools that have links to accessible datasets, benchmarking resources, and public workflows to aid in training and reproducibility for image processing and analysis. The ITR is still work in progress, and it is also accessible here.

If you’d like to submit a tool to be included in ITR, please email us at info@eurobioimaging.eu.

Tags Key : F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data

Name Domains Tags Data and Results
Icy bio-imaging
medical-imaging
stand-alone manual
Osirix medical-imaging volume rendering stand-alone
wnd-charm bio-imaging
medical-imaging
feature extraction image classification automated
XNAT medical-imaging stand-alone
CellCognition
screening
bio-imaging
T
CellProfiler screening
bio-imaging
medical-imaging
feature extraction image classification automated manual F R N
EBImage screening F R N
ilastik bio-imaging
medical-imaging
feature extraction image classification automated manual
Fiji/ImageJ bio-imaging
medical-imaging
stand-alone manual F R O N
Knime bio-imaging
medical-imaging
automated manual
Mahotas bio-imaging
medical-imaging
marine
feature extraction watershed F R
OMERO screening
bio-imaging
medical-imaging
stand-alone N
TrackMate bio-imaging
medical-imaging
object tracking T

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