If you’d like to submit a tool to be included in ITR, please email us at info@eurobioimaging.eu.
If you’d like to submit a tool to be included in ITR, please email us at info@eurobioimaging.eu.
Tags Key : F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Name | Domains | Tags | Data and Results | |
|---|---|---|---|---|
| Icy |
bio-imaging medical-imaging |
stand-alone manual | ||
| Osirix | medical-imaging | volume rendering stand-alone | ||
| wnd-charm |
bio-imaging medical-imaging |
feature extraction image classification automated | ||
| XNAT | medical-imaging | stand-alone | ||
| CellCognition |
screening
bio-imaging
|
T | ||
| CellProfiler |
screening bio-imaging medical-imaging |
feature extraction image classification automated manual | F R N | |
| EBImage | screening | F R N | ||
| ilastik |
bio-imaging medical-imaging |
feature extraction image classification automated manual | N | |
| Fiji/ImageJ |
bio-imaging medical-imaging |
stand-alone manual | F R O N | |
| Knime |
bio-imaging medical-imaging |
automated manual | ||
| Mahotas |
bio-imaging medical-imaging marine |
feature extraction watershed | F R | |
| OMERO |
screening bio-imaging medical-imaging |
stand-alone | N | |
| TrackMate |
bio-imaging medical-imaging |
object tracking | T |
Project URL: https://www.cellcognition-project.org/
Tags Key: F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Dataset | Results Availability | Notebooks |
|---|---|---|
| idr0002 | upon request |
Project URL: http://cellprofiler.org
Tags Key: F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Dataset | Results Availability | Notebooks |
|---|---|---|
| idr0002 | upon request | Notebook |
| idr0016 | upon request | |
| idr0025 | contact authors | |
| idr0033 | upon request | |
| idr0036 | upon request |
Project URL: https://bioconductor.org/packages/EBImage
Tags Key: F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Dataset | Results Availability | Notebooks |
|---|---|---|
| idr0012 | upon request | |
| idr0017 | contact authors | |
| idr0040 | upon request | Notebook |
Project URL: https://imagej.net/
Tags Key: F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Dataset | Results Availability | Notebooks |
|---|---|---|
| idr0010 | contact author | |
| idr0011 | contact author | |
| idr0021 | upon request | Notebook |
| idr0026 | contact author | |
| idr0038 | contact author |
Project URL: http://mahotas.rtfd.io
Tags Key: F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Dataset | Results Availability | Notebooks |
|---|---|---|
| idr0015 | upon request |
Project URL: https://www.openmicroscopy.org
Tags Key: F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Dataset | Results Availability | Notebooks |
|---|---|---|
| idr0040 | upon request | Notebook |
Project URL: https://imagej.net/TrackMate
Tags Key: F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Dataset | Results Availability | Notebooks |
|---|---|---|
| idr0038 | upon request |
Project URL: http://www.ilastik.org
Tags Key: F Feature data R Regions of interest (ROI) T Track data N Notebooks O Other data
| Dataset | Results Availability | Notebooks |
|---|---|---|
| idr0062 | upon request | Notebook |