Image Analysis Services


Transform Images Into Insights

Tejada-Arranz et al., 2020.

Euro-BioImaging’s Image Data Analysis Services provide expert, personalized support for transforming complex imaging data into meaningful scientific insights. Our dedicated Bioimage Analysts across Europe collaborate closely with users to tailor analysis solutions—whether it involves basic image processing, advanced workflows, or machine learning techniques—empowering scientists to accelerate discovery and enhance the impact of their research.

Why Choose Our Service?

If you need help with image data

  • denoising
  • registration
  • segmentation
  • tracking

and other image analysis methods, then you can profit from our image analysis service. 

Photo from the first Workshop organized by the newly created DBI-INFRA Image Analysis Core Facility, about the open source software QuPath.

Through various Euro-BioImaging Nodes, you can:

  • Receive expert guidance for a range of image analysis needs applied to diverse biological and biomedical image datasets
  • Benefit from bespoke workflows and custom analysis tools developed to address specific scientific questions, incorporating state-of-the-art machine learning methods when applicable.
  • Access high-performance computing resources and specialized software to efficiently analyse and manage large and complex imaging datasets.

Did you know?

These services can be requested together with access to imaging instruments at a Node, or as a standalone analysis services for image data irrespective of where it was acquired.

Supporting open tools

In addition to personalized analysis support, our bioimage analysts contribute actively to open-source image analysis tools and libraries that serve both the Euro-BioImaging community and the broader scientific field.

Data open tools logos (BioImage Model Zoo, Elastix, FIJI, Galaxy, Ilastik, Mamut, Napari, Omero, TissuuMaps, Trackmate, XNAT)

How to access the Image Analysis Service

Step 1: Click on 'Technologies' tab on the Euro-BioImaging Access Portal.
Step 2: Find 'Image Data and Image Analysis Services' as part of our technology portfolio.
Step 3: Choose the desired service and proceed to submit a proposal (requires log in).
If you don't know which Node to go to, we can help you find a suitable one. Please select 'No Node preference' for that.

Step 4: Euro-BioImaging will contact you on the next steps regarding your proposal.

Hear from the Nodes that offer image analysis services

Some of our Nodes present their image analysis services and showcase their portfolio at the Image Data Community Days 2025.

Jean-Yves Tinevez from the Image Analysis Hub at the Institute Pasteur in Paris talks about why is bioimage analysis a rewarding career.

Image analysis user stories

October 13, 2025

Euro-BioImaging at the European Galaxy Days 2025

Euro-BioImaging was excited to participate in the European Galaxy Days 2025 in Freiburg, 1–3 October. We shared updates from our…

VRVis video interview

September 5, 2025

How can Austrian BioImaging support your image analysis project?

Austrian BioImaging/CMI is a multi-sited, multimodality Node covering biological and biomedical imaging from cryo-electron and advanced light microscopy up to the preclinical level (including…

July 31, 2025

Connecting Imaging Minds Worldwide: Euro-BioImaging Image Data Community Days 2025

The first-ever Euro-BioImaging Image Data Community Days, held online from April 7–11, 2025, concluded with resounding success, providing a dynamic platform for participants to…

Junel Solis, Finish Advanced Microscopy Node, at work analysing microscope data.

July 24, 2025

Meet Junel Solis, Head Image Data Analyst at the Finnish Advanced Microscopy Node

As part of our ongoing series spotlighting the talented scientists working at the Euro-BioImaging Nodes, we sat down with Junel Solis, an expert in…

June 20, 2025

First OSCARS FIESTA cross-disciplinary tutorial on Voronoi-based segmentation

The first major outcome of the OSCARS FIESTA project is a brand new Galaxy training tutorial on Voronoi-based segmentation. Developed from…

May 20, 2025

Highlights from the Galaxy Image Analysis Hackathon 2025

In April 2025, imaging researchers, tool developers, and data scientists came together for the Galaxy Imaging Hackathon, a four-day sprint dedicated to advancing FAIR…

March 27, 2025

Euro-BioImaging and partners launch the project FAIR Image Analysis Across Sciences with OSCARS support

Euro-BioImaging, alongside Simula, EPFL and the University of Bergen, is proud to announce the launch of FAIR Image Analysis Across Sciences,…

March 13, 2025

FAIR Image Analysis: Insights from BioHackathon Europe 2024 

At this year’s BioHackathon Europe 2024 in Barcelona, a dedicated group of enthusiasts developed FAIR  image analysis workflows in the Galaxy platform. Led by…

March 12, 2025

Euro-BioImaging joins RI-SCALE

Euro-BioImaging joins RI-SCALE: A new EU-funded Project Unlocking RI Potential with Scalable AI and Data Euro-BioImaging is proud to be part of the newly…

Miranda cropped

February 11, 2025

Gisele Miranda: From image analyst to group leader

Core facility image analysts play a crucial role in supporting research. They act as a bridge between computer science and biology, leveraging their expertise…

February 3, 2025

Join us for the Euro-BioImaging Image Data Community Days 2025

Euro-BioImaging is proud to announce that we will be hosting the first Euro-BioImaging Image Data Community Days during the week of 7-11 April 2025.

Distributed Training course - Intro to BioImage Analysis with Python for Life Scientists banner

August 29, 2024

Distributed Training course - Intro to BioImage Analysis with Python for Life Scientists

Euro-BioImaging is proud to announce a pilot distributed training course for “Intro to BioImage Analysis with Python for Life Scientists” from October 7th to…

AI4Life Denoising Challenge 2024

July 9, 2024

Participate in AI4Life’s Denoising Challenge

The AI4Life project, coordinated by Euro-BioImaging, is happy to announce the launch of the first AI4Life challenge, which aims to improve denoising techniques for microscopy images. Join the challenge now and submit your solutions by July 31st.

March 11, 2024

STAGETOOL: Deploying deep learning for a wider audience

Many Euro-BioImaging Nodes are working on innovative image analysis and image data management solutions and the next Euro-BioImaging User Forum is designed to highlight…

September 2, 2020

Euro-BioImaging contributes to cloud-based biological image analysis workflow tools

The European Open Science Cloud (EOSC) is a digital platform for the European science community, designed to give researchers from the European Union…

Regular contacts with users are planned prior to the beginning of the project in remote access projects at MMMI Italian Node.

June 25, 2020

Remote access in preclinical imaging services

Imaging facilities across the globe are scrambling to adapt remote procedures – or new, stricter hygiene measures – that make it possible to open…

November 21, 2019

Registration & Abstracts for the 4th NEUBIAS conference (29/2-6/3, 2020) in Bordeaux, France, now open

The registration for the 4th NEUBIAS conference in Bordeaux, Feb 29- Mar 6 February 2020, is now open. NEUBIAS brings together life-scientists, bioimage analysts, microscopists, and…

Your questions answered

We have compiled an extensive list of questions and answers covering the Image Analysis service as well as all our other data services. You’ll find everything you need to get started right here. If your question isn’t answered, please don’t hesitate to contact us.