Image Analysis Services


Transform Images Into Insights

Tejada-Arranz et al., 2020.

Euro-BioImaging’s Image Data Analysis Services provide expert, personalized support for transforming complex imaging data into meaningful scientific insights. Our dedicated Bioimage Analysts across Europe collaborate closely with users to tailor analysis solutions—whether it involves basic image processing, advanced workflows, or machine learning techniques—empowering scientists to accelerate discovery and enhance the impact of their research.

Why Choose Our Service?

If you need help with image data

  • denoising
  • registration
  • segmentation
  • tracking

and other image analysis methods, then you can profit from our image analysis service. 

Photo from the first Workshop organized by the newly created DBI-INFRA Image Analysis Core Facility, about the open source software QuPath.

Through various Euro-BioImaging Nodes, you can:

  • Receive expert guidance for a range of image analysis needs applied to diverse biological and biomedical image datasets
  • Benefit from bespoke workflows and custom analysis tools developed to address specific scientific questions, incorporating state-of-the-art machine learning methods when applicable.
  • Access high-performance computing resources and specialized software to efficiently analyse and manage large and complex imaging datasets.

Did you know?

These services can be requested together with access to imaging instruments at a Node, or as a standalone analysis services for image data irrespective of where it was acquired.

Supporting open tools

In addition to personalized analysis support, our bioimage analysts contribute actively to open-source image analysis tools and libraries that serve both the Euro-BioImaging community and the broader scientific field.

Data open tools logos (BioImage Model Zoo, Elastix, FIJI, Galaxy, Ilastik, Mamut, Napari, Omero, TissuuMaps, Trackmate, XNAT)

How to access the Image Analysis Service

Step 1: Click on 'Technologies' tab on the Euro-BioImaging Access Portal.
Step 2: Find 'Image Data and Image Analysis Services' as part of our technology portfolio.
Step 3: Choose the desired service and proceed to submit a proposal (requires log in).
If you don't know which Node to go to, we can help you find a suitable one. Please select 'No Node preference' for that.

Step 4: Euro-BioImaging will contact you on the next steps regarding your proposal.

Hear from the Nodes that offer image analysis services

Some of our Nodes present their image analysis services and showcase their portfolio at the Image Data Community Days 2025.

Jean-Yves Tinevez from the Image Analysis Hub at the Institute Pasteur in Paris talks about why is bioimage analysis a rewarding career.

Image analysis user stories

October 13, 2025

Euro-BioImaging at the European Galaxy Days 2025

Euro-BioImaging was excited to participate in the European Galaxy Days 2025 in Freiburg, 1–3 October. We shared updates from our…

VRVis video interview

September 5, 2025

How can Austrian BioImaging support your image analysis project?

Austrian BioImaging/CMI is a multi-sited, multimodality Node covering biological and biomedical imaging from cryo-electron and advanced light microscopy up to the preclinical level (including…

July 31, 2025

Connecting Imaging Minds Worldwide: Euro-BioImaging Image Data Community Days 2025

The first-ever Euro-BioImaging Image Data Community Days, held online from April 7–11, 2025, concluded with resounding success, providing a dynamic platform for participants to…

Junel Solis, Finish Advanced Microscopy Node, at work analysing microscope data.

July 24, 2025

Meet Junel Solis, Head Image Data Analyst at the Finnish Advanced Microscopy Node

As part of our ongoing series spotlighting the talented scientists working at the Euro-BioImaging Nodes, we sat down with Junel Solis, an expert in…

Your questions answered

We have compiled an extensive list of questions and answers covering the Image Analysis service as well as all our other data services. You’ll find everything you need to get started right here. If your question isn’t answered, please don’t hesitate to contact us.