Training services


Euro-BioImaging offers training of the highest quality, as we have Europe’s best imaging experts under the roof of our Nodes. We coordinate and support several levels of training: general, specific and advanced. We focus on both current and future users (masters and PhD students, post-graduates, senior scientists, technicians) as well as on the staff of imaging facilities across Europe. We offer numerous courses that for instance teach you how to use various imaging technologies or analyze and process your results. When you visit a Node, we also offer hands-on training to the imaging technologies, to make sure your experiments are successful.

Current portfolio of training courses and resources

Because of the ongoing emergency related to the Covid-19 pandemic, many of the courses listed below may be cancelled or postponed. We recommend you to get in touch directly with the organizers to verify the status of each training event.

If you have any questions or wish to include a course on this list, contact info@eurobioimaging.eu

Biological imaging

Czech Republic - Advanced Light and Electron Microscopy Node Prague CZ
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
In vivo imaging in animal models(U)
Institute of Physiology, CAS, Prague (P)
TBD (Q2-Q3)(R)
Live animal imaging/2P
animal imaging, large samples, multiphoton
Technical aspects of experiments using advanced light microscopy(U)
Prague (P)
3 Nov - 4 Nov 2021(R)
2P/OPT/design of experiment
design of experiment, methods comparison, image processing and analysis
Virtual Reality tools in biology data analysis(U)
Prague (P)
TBD(Q4) (R)
Virtual Reality
microscopy images, virtual reality, image processing and analysis
Processing and Analysis of Microscopic Images in Biomedicine (PAMIB)(U)
Institute of Molecular Genetics, CAS, Prague (P)
15 Nov - 19 Nov 2021 (R)
Image processing and analysis
ImageJ/Fiji, image 2D/3D processing & analysis
Single molecule microscopy and manipulation (SMMM)(U)
BIOCEV, Prague (P)
18 Oct - 22 Oct 2021 (R)
FCS, FCCS, STORM, TIRF (T, H)
Quantitative bioimaging, Optical tweezers, TIRF, Single particle tracking, DNA-PAINT, Point FCS, FCCS, FLCS, STED-FCS, Line-scan FCS, Imaging FCS
3D-CLEM Imaging function and ultrastructure(U)
BIOCEV, Prague (P)
22 Nov - 25 Nov 2021 (R)
CLEM, EM, CLSM, MMS, QPI, SDCM (T, H)
FIB-SEM, sample preparation, 3D data visualization, correlative imaging, multi-modal imaging, confocal microscopy
Biology Specimens in Electron Microscopes(U)
Institute of Parasitology, BC CAS, Ceske Budejovice (P)
TBD (4 Oct - 8 Oct 2021) (R)
TEM, electron tomography, SEM, cryo-SEM, SBF-SEM, array tomography (T, H)
practical course, specimen preparation, high pressure freezing, plunge freezing, freeze substitution, immunogold labeling, sectioning, negative staining
Transmission electron microscopy in life sciences(U)
Institute of Molecular Genetics, CAS, Prague (P)
TBD (Q3 - Q4) (R)
Electron microscopy: TEM (T, H)
practical course, transmission electron microscopy, specimen preparation, cryo-TEM



Czech Republic - Advanced Light Microscopy and Medical Imaging Node Brno CZ
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Processing and Analysis of Biological Images: Focus on Cell Tracking(U)
Virtual (organised by Advanced Light Microscopy and Medical Imaging Node Brno CZ) (O)
TBD (R)
LSCM/CLSM, SDCM, DWM, FRET, FRAP, Image analysis (T)
Image analysis, 3D reconstruction, Cell Tracking
Milan Esner



European Molecular Biology Laboratory(EMBL) - Euro-BioImaging EMBL-Node
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Fundamentals of Widefield and Confocal Microscopy and Imaging(U, F)
European Molecular Biology Laboratory (EMBL), Heidelberg (P)
31 May - 04 Jun 2021 (R)
LSCM, DWM, FRAP (T, H)
fundamentals of light microscopy, widefield microscopy, transmission contrast methods, fluorescence microscopy
Lea Hohmann
Advanced Fluorescence Imaging Techniques(U, F)
European Molecular Biology Laboratory (EMBL), Heidelberg (P)
6 Jun - 11 Jun 2021 (R)
LSCM, DWM, TIRF, STORM, FRET, FRAP, Image processing and data analysis (T, H)
super-resolution microscopy, image analysis
Tim Nurnberger
Super-Resolution Microscopy(U, F)
European Molecular Biology Laboratory (EMBL), Heidelberg (P)
5 Jul - 10 Jul 2021 (R)
STORM, GSDIM, STED (T, H)
super-resolution microscopy
Tim Nurnberger
Super-Resolution Microscopy: Time-Resolved STED Nanoscopy(U, F)
European Molecula Biology Laboratory (EMBL), Heidelberg (P)
12 Jul - 16 Jul 2021 (R)
STED (T, H)
super-resolution microscopy
Inna Bosselmann



Finland - Finnish Advanced Light Microscopy Node
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Basic Bioimage Informatics 2020 (U, F)
Virtual (organised by University of Turku) (O)
TBD (R)
Data analysis (T, H)
Image data, Image analysis
Laura Mairinoja
Bioimage Informatics 2 (U, F)
University of Turku (O)
01 Feb - 31 Mar 2021 (R)
Data analysis (T, H)
Image data, Image analysis, machine learning
Pasi Kankaanpää
Automated Bioimage Analysis (U, F)
University of Turku (O)
15 Mar - 25 May 2021 (R)
Data analysis (T, H)
Machine learning, Image data, Image analysis
Laura Mairinoja
Quantification of histopathology using image analysis (U, F)
University of Turku (O)
Spring 2021 (R)
Data analysis (T, H)
Machine learning, Image data, Image analysis
Laura Mairinoja
Histology and Histopathology (U, F)
Åbo Akademi University (O)
07 Mar - 07 May 2021 (R)
Data analysis (T, H)
Image data, Image analysis
Diana Toivola
Advanced Microscopy lectures (U, F)
Åbo Akademi University (O)
11 Jan - 21 Mar 2021 (R)
LSCM, TIRF, STED, SIM, STORM, FRET, FRAP, FLIM, Image processing and data analysis (T, H)
super-resolution microscopy, image analysis
Guillaume Jacquemet
Imaging techniques lecture course, Light Microscopy & Electron Microscopy Basics (U, F)
University of Helsinki (O)
September 2021 (R)
LSCM, EM
fundamentals of light microscopy and electron microscopy
Suvi Saarnio
Practical course in Light Microscopy (U, F)
University of Helsinki (O)
Nov/Dec 2021 (R)
EM
TEM, SEM
Suvi Saarnio
Advanced techniques symposium with invited speakers, Light Microscopy & Electron Microscopy (U, F)
University of Helsinki (O)
Jan/Feb 2022 (R)
LSCM, SDCM, TIRF, PALM, STORM
fundamentals of light microscopy
Suvi Saarnio



France - French BioImaging Node
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Light-Sheet Fluorescence Microscopy Remote Training(U)
Remote: Videos on FBI Youtube Channel + Live Q&A session on ZOOM
15 Feb - 05 Mar 2021 Videos available for registered participants from 15 Feb - 05 Mar 2021, Live Q&A on March 5th 2021 (R)
Light-Sheet Fluorescence Microscopy, Single Plane Illumination Microscope, Lattice Light Sheet Microscope (T,H)
light-sheet microscopy, fluorescence microscopy, data analysis
Remi Galland



Netherlands - Facility of Multimodal Imaging - AMMI Maastricht
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Course on Advanced Optical Microscopy(U)
Maastricht University (P)
7 - 11 Jun 2021 (R)
LSCM/CLSM, MMS, STED, PALM, STORM, FLIM, FRET, HTM, SPIM (T, H)
in vivo/ex vivo imaging, sample preparation and clearing, 3D imaging restoration, image processing
Erika Bemelmans



Netherlands - The Van Leeuwenhoek Center for Advanced Microscopy (LCAM) - Functional Imaging Flagship Node Amsterdam
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Functional Imaging(U)
Amsterdam (P)
18 Oct - 20 Oct 2021 (R)
PALM, FCS, FCCS, FLIM, FRET, FRAP (T, H)
functional imaging, PALM, FCS, FCCS, FLIM, FRET, FRAP, data analysis
Mark Hink
Basics in Fluorescence Microscopy(U)
Amsterdam (P)
25 Jan - 28 Jan 2021 (R)
LSCM, DWM, FCS, FCCS, FLIM, FRET, FRAP (T, H)
basics of fluorescence microscopy, confocal, widefield, probes, live-cell microscopy, image analysis, data presentation, functional imaging
Mark Hink



Netherlands - Wageningen Imaging and Spectroscopy Hub (WISH) - ALM and Molecular Imaging Node Wageningen
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Microspectroscopy: Functional Imaging of Biological Systems(U)
Microspectroscopy Research Facility Wageningen of Wageningen University & Research and Microscopic Imaging Centre of Radboud Institute for Molecular Life Sciences (P)
14 Sep - 23 Sep 2021 (R)
LSCM, MMS, TIRF, FRET, FLIM, FCS, FRAP, PALM, STORM, STED (T, H)
microscopic and spectroscopic techniques, super-resolution, biological processes, living cells
Jan Willem Borst



Portugal - Portuguese Platform of BioImaging (PPBI)
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Introduction to digital bioimage analysis(U)
i3S (P)
12 Oct - 15 Oct 2021 (R)
Image processing and analysis (T, H)
ImageJ/Fiji, macro programming, image stitching, registration
Mafalda Souda



Biomedical imaging

Czech Republic - Advanced Light Microscopy and Medical Imaging Node Brno CZ
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
NeuroImaging: Mapping the function and structure of brain(U)
Multimodal and Functional Imaging laboratory (MAFIL), CEITEC MU (P)
TBD (R)
High-field MRI, Micro-MRI (T, H)
neuroimaging, MRI, electrophysiology, simultaneous EEG-fMRI, preclinical
Michal Mikl



Finland - Finnish Biomedical Imaging Node
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Principles And Applications of Neuroimaging Data Analysis(U)
University of Turku (P)
18 Aug- 20 Aug 2021 (S)
PET, MRI, MRI-PET (T, H)
human neuroimaging; preprocessing; image analysis; PET; MRI; fMRI; neuroinformatics
Lauri Nummenmaa
Lenita Saloranta



Netherlands - Facility of Multimodal Imaging - AMMI Maastricht
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Artificial Intelligence 4 Imaging Radiomics, Deep Learning, Synthetic Data and Distributed Learning(U)
Maastricht University (P)
8 Dec - 11 Dec 2021 (S)
(Micro)-PET, (Micro)-SPECT, (Micro)-MRI, (Micro)-CT, (Micro)-PET/CT, (Micro)-MRI/PET(SPECT), MRI-PET (T, H)
AI, medical imaging, clinical decision support, precision medicine
Mieke Akkers



Netherlands - Population Imaging Node Rotterdam
U = user training, F = facility staff training, O = online, P = physical, S = single time course, R = repeating course, T = theoretical, H = hands-on
Name of the course
Location
Course timing
Euro-BioImaging technology/service
Keywords
Contact person
Big Data Analytics: What, why and how?(U)
Erasmus MC University Medical Center Rotterdam (P)
Aug 2021 (R)
Population imaging, Challenges framework (T, H)
big data, bias, epidemiology, analytics, programming
Daniel Bos



Training Resources from Industry Partners

Companies in the imaging field that are represented on the Euro-BioImaging Industry Board offer a wide range of freely available resources through their own digital channels.

Click to view a summary of the different platforms for comprehensive training material and product information from general principles to specific technologies and applications.

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